Publications

Found 26 results
Type [ Year(Desc)]
0
Lynch, MD, Warnecke, T, Singh, A, and Gill, RT. "Genomics tools for elucidating the function of trait conferring genes." In AIChE Annual Meeting, Conference Proceedings.
2004
Lynch, MD, Gill, RT, and Stephanopoulos, G. "Mapping phenotypic landscapes using DNA micro-arrays." Metabolic Engineering 6, no. 3 (2004): 177-185.
2005
Lynch, MD, Warnecke, T, Singh, A, and Gill, RT. "Genomics tools for elucidating the function of trait conferring genes." In AIChE Annual Meeting, Conference Proceedings., 2005.
Warnecke, T, Lynch, MD, and Gill, RT. "Identification of organic acid tolerance genes in E. coli for biorefinery applications." In AIChE Annual Meeting, Conference Proceedings., 2005.
Lynch, MD, Warnecke, T, and Gill, RT. "Mixed-library parallel gene trait mapping: A quantitative micro-array technique for the genome-wide identification of trait conferring genes." In ACS National Meeting Book of Abstracts, U202. Vol. 229., 2005.
Warnecke, TE, Lynch, MD, and Gill, RT. "Post-genomics approach to understanding E. Coli network architecture." In ACS National Meeting Book of Abstracts, U227. Vol. 229., 2005.
2006
Lynch, MD, and Gill, RT. "Broad host range vectors for stable genomic library construction." Biotechnology & Bioengineering 94, no. 1 (2006): 151-158.
2007
Lynch, MD, Warnecke, T, and Gill, RT. "SCALEs: multiscale analysis of library enrichment." Nature Methods 4, no. 1 (2007): 87-93.
2008
Bonomo, J, Lynch, MD, Warnecke, T, Price, JV, and Gill, RT. "Genome-scale analysis of anti-metabolite directed strain engineering." Metabolic Engineering 10, no. 2 (2008): 109-120.
Warnecke, TE, Lynch, MD, Karimpour-Fard, A, Sandoval, N, and Gill, RT. "A genomics approach to improve the analysis and design of strain selections." Metabolic Engineering 10, no. 3-4 (2008): 154-165.
Gall, S, Lynch, MD, Sandoval, NR, and Gill, RT. "Parallel mapping of genotypes to phenotypes contributing to overall biological fitness." Metabolic Engineering 10, no. 6 (2008): 382-393.
2009
Singh, A, Lynch, MD, and Gill, RT. "Genes restoring redox balance in fermentation-deficient E. coli NZN111." Metabolic Engineering 11, no. 6 (2009): 347-354.
2010
Prior, JE, Lynch, MD, and Gill, RT. "Broad-host-range vectors for protein expression across gram negative hosts." Biotechnology & Bioengineering 106, no. 2 (2010): 326-332.
Warnecke, TE, Lynch, MD, Karimpour-Fard, A, Lipscomb, ML, Handke, P, Mills, T, Ramey, CJ, Hoang, T, and Gill, RT. "Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes." Metabolic Engineering 12, no. 3 (2010): 241-250.
2011
Mercogliano, CP, Liao, HH, and Lynch, MD. "Enzyme evolution of an alpha-keto decarboxylase." In ACS National Meeting Book of Abstracts. Vol. 241., 2011.
Lynch, MD, Manness, PC, Lipscomb, M, Warnecke, T, and Liao, H. "Novel biological conversion of hydrogen and carbon dioxide directly into biodiesel." In ACS National Meeting Book of Abstracts., 2011.
2012
Watson, FD, Mercogliano, CP, Ribble, WK, Anderson, RD, Liao, HH, Lipscomb, TW, and Lynch, MD. "Enzyme engineering of malonyl coA reductase (MCR) to improve 3-hydroxypropionate (3HP) production." In ACS National Meeting Book of Abstracts. Vol. 243., 2012.
Warnecke, TE, Lynch, MD, Lipscomb, ML, and Gill, RT. "Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli." Biotechnology & Bioengineering 109, no. 5 (2012): 1347-1352.
Lipscomb, TW, Lipscomb, ML, Gill, RT, and Lynch, MD. "Metabolic Engineering of Recombinant E. coli for the Production of 3-Hydroxypropionate." (2012): 185-120.
Lipscomb, ML, Lipscomb, TW, Liao, H, Maness, P, and Lynch, MD. "Production of fungible diesel via fatty acid synthesis from hydrogen and carbon dioxide feedstocks." In ACS National Meeting Book of Abstracts. Vol. 243., 2012.
2013
Boyle, NR, Reynolds, TS, Evans, R, Lynch, M, and Gill, RT. "Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing." Biotechnology Journal 8, no. 5 (2013): 515-522.
Garst, A, Lynch, M, Evans, R, and Gill, RT. "Strategies for the multiplex mapping of genes to traits." Microbial Cell Factories 12, no. 1 (2013): 99.
2014
Lynch, MD. "A rational microbial design perspective in the design build test era." In Metabolic Engineering X, 505-528., 2014.
2016
Lynch, MD. "Into new territory: improved microbial synthesis through engineering of the essential metabolic network." Current Opinion in Biotechnology 38 (2016): 106-111.
Burg, JM, Cooper, CB, Ye, Z, Reed, BR, Moreb, EA, and Lynch, MD. "Large-scale bioprocess competitiveness: the potential of dynamic metabolic control in two-stage fermentations." Current Opinion in Chemical Engineering 14 (2016): 121-136.

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