Publications

Found 26 results
Type [ Year(Asc)]
2017
EA Moreb, B Hoover, A Yaseen, N Valyasevi, Z Roecker, R Menacho-Melgar, and MD Lynch. "Managing the SOS Response for Enhanced CRISPR-Cas-Based Recombineering in E. coli through Transient Inhibition of Host RecA Activity." ACS Synthetic Biology (2017).
2016
MD Lynch. "Into new territory: improved microbial synthesis through engineering of the essential metabolic network." Current Opinion in Biotechnology 38 (2016): 106-111.
JM Burg, CB Cooper, Z Ye, BR Reed, EA Moreb, and MD Lynch. "Large-scale bioprocess competitiveness: the potential of dynamic metabolic control in two-stage fermentations." Current Opinion in Chemical Engineering 14 (2016): 121-136.
2014
MD Lynch. "A rational microbial design perspective in the design build test era." In Metabolic Engineering X, 505-528. 2014.
2013
NR Boyle, TS Reynolds, R Evans, M Lynch, and RT Gill. "Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing." Biotechnology Journal 8, no. 5 (2013): 515-522.
A Garst, M Lynch, R Evans, and RT Gill. "Strategies for the multiplex mapping of genes to traits." Microbial Cell Factories 12, no. 1 (2013): 99.
2012
FD Watson, CP Mercogliano, WK Ribble, RD Anderson, HH Liao, TW Lipscomb, and MD Lynch. "Enzyme engineering of malonyl coA reductase (MCR) to improve 3-hydroxypropionate (3HP) production." In ACS National Meeting Book of Abstracts. Vol. 243. 2012.
TE Warnecke, MD Lynch, ML Lipscomb, and RT Gill. "Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli." Biotechnology & Bioengineering 109, no. 5 (2012): 1347-1352.
TW Lipscomb, ML Lipscomb, RT Gill, and MD Lynch. "Metabolic Engineering of Recombinant E. coli for the Production of 3-Hydroxypropionate." (2012): 185-120.
ML Lipscomb, TW Lipscomb, H Liao, P Maness, and MD Lynch. "Production of fungible diesel via fatty acid synthesis from hydrogen and carbon dioxide feedstocks." In ACS National Meeting Book of Abstracts. Vol. 243. 2012.
2011
CP Mercogliano, HH Liao, and MD Lynch. "Enzyme evolution of an alpha-keto decarboxylase." In ACS National Meeting Book of Abstracts. Vol. 241. 2011.
MD Lynch, PC Manness, M Lipscomb, T Warnecke, and H Liao. "Novel biological conversion of hydrogen and carbon dioxide directly into biodiesel." In ACS National Meeting Book of Abstracts. 2011.
2010
JE Prior, MD Lynch, and RT Gill. "Broad-host-range vectors for protein expression across gram negative hosts." Biotechnology & Bioengineering 106, no. 2 (2010): 326-332.
TE Warnecke, MD Lynch, A Karimpour-Fard, ML Lipscomb, P Handke, T Mills, CJ Ramey, T Hoang, and RT Gill. "Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes." Metabolic Engineering 12, no. 3 (2010): 241-250.
2009
A Singh, MD Lynch, and RT Gill. "Genes restoring redox balance in fermentation-deficient E. coli NZN111." Metabolic Engineering 11, no. 6 (2009): 347-354.
2008
J Bonomo, MD Lynch, T Warnecke, JV Price, and RT Gill. "Genome-scale analysis of anti-metabolite directed strain engineering." Metabolic Engineering 10, no. 2 (2008): 109-120.
TE Warnecke, MD Lynch, A Karimpour-Fard, N Sandoval, and RT Gill. "A genomics approach to improve the analysis and design of strain selections." Metabolic Engineering 10, no. 3-4 (2008): 154-165.
S Gall, MD Lynch, NR Sandoval, and RT Gill. "Parallel mapping of genotypes to phenotypes contributing to overall biological fitness." Metabolic Engineering 10, no. 6 (2008): 382-393.
2007
MD Lynch, T Warnecke, and RT Gill. "SCALEs: multiscale analysis of library enrichment." Nature Methods 4, no. 1 (2007): 87-93.
2006
MD Lynch, and RT Gill. "Broad host range vectors for stable genomic library construction." Biotechnology & Bioengineering 94, no. 1 (2006): 151-158.
2005
MD Lynch, T Warnecke, A Singh, and RT Gill. "Genomics tools for elucidating the function of trait conferring genes." In AIChE Annual Meeting, Conference Proceedings. 2005.
T Warnecke, MD Lynch, and RT Gill. "Identification of organic acid tolerance genes in E. coli for biorefinery applications." In AIChE Annual Meeting, Conference Proceedings. 2005.
MD Lynch, T Warnecke, and RT Gill. "Mixed-library parallel gene trait mapping: A quantitative micro-array technique for the genome-wide identification of trait conferring genes." In ACS National Meeting Book of Abstracts, U202. Vol. 229. 2005.
TE Warnecke, MD Lynch, and RT Gill. "Post-genomics approach to understanding E. Coli network architecture." In ACS National Meeting Book of Abstracts, U227. Vol. 229. 2005.
2004
MD Lynch, RT Gill, and G Stephanopoulos. "Mapping phenotypic landscapes using DNA micro-arrays." Metabolic Engineering 6, no. 3 (2004): 177-185.

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